rs32574692 SNP Detail

Summary

• ID
  rs32574692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149408822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GGTCTGTATG AAGCATCTCT
  R
  AGTATTTTTT GTCAACCCAG AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45665243	mCV24954187	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		A
ss46702545	NES10938493	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A		G	A	G	G		G	A	G	A		G
ss148031238	ENSMUSSNP1146056	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss321425391	CHEV_4_148698474	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32574692					SNP	A	G	A	G	A	A	G	G	A	G	G	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702545	NES10938493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149408822 () rs orientation: forward

Symbol	Name	Function Class
Rr604885	regulatory region 604885	90 bp distal
Rr604886	regulatory region 604886	319 bp proximal
Rr604887	regulatory region 604887	515 bp proximal
Rr604888	regulatory region 604888	748 bp proximal
Rr604889	regulatory region 604889	1267 bp proximal
Rr604890	regulatory region 604890	1267 bp proximal
Tssr40322	transcription start site region 40322	388 bp downstream
Tssr40323	transcription start site region 40323	373 bp downstream