rs32568799 SNP Detail

Summary

• ID
  rs32568799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148966523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCCTCT TCCACCACCA
  GCCCCGTTAG CCTCAATAAA CCAGGATGTG TCTTTCAAGA TACATCCACC CTTTCCTCCA
  AGCTCCCAGG AAACATCTGC CAGTCTACTC AAGCAGAGAG CGACAGGCAA GGACCTATAC
  CAGGAGTCAC CTCTCACCTT CCCACCAAGA GATGGGTCTG GAGGACAGGG CTGGTAGCAC
  R
  CACCATAGCC CCAAGTCAGG CTGCTCCCAG TACCACTCCC CACTTCCTTC CTGACTCTAA
  TGACTTTTAA ATATTGGTAA ATATTTTGGC TAAAGCAGGC TCTCTCGTGG CAGAGAGCAA
  AGCCGTGTGC AGTTCAGGAC CTACAAATTA TTTATTAAAG ATCTGAGATG CGGTGCAATT
  ATGTGGAAAG AACCCAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46698309	NES10931279	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32568799					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46698309	NES10931279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148966523 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr604786	regulatory region 604786	within coordinates
Rr604787	regulatory region 604787	398 bp proximal