rs32568146 SNP Detail

Summary

• ID
  rs32568146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149069552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCGCCA TCTGCAGTGG
  TTATAGCATG TGGAAAGGAT TTGCCAAGAA GGAAGGGAGA GCCAGTGAAA GTCCAGGCTC
  CTAACCTAGC AGGCTGGGAG CAGAGAGGTA TTCAGAGGGC CTGAGGCCGA CTGGGGGACC
  GATGGTAAAG GAGGAGGGCT CCATAGGACT AAAGTGTAGA GCCCAGGTTT GCAACAAGAT
  Y
  CCTACAGGGC CCACTCGGGA AGTAATGGTG TATACAAAGA GATCTACTGC CGAGGGTGAA
  AAGCAGGTGA GAGGTCACTG CTAGCATGCA GAAGACAACT CAAGCTGGTC CAGGCTGTTC
  CGGGAATCCC AATATCCAAT AGAGCCACAA CACAGAGCTT TTAAACCGGG GCCAAGAGCT
  TTTCCACATC TGGTCGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46699020	NES10929639	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32568146					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46699020	NES10929639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149069552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr1858	regulatory region 1858			within coordinates
Rr604814	regulatory region 604814			within coordinates
Rr604815	regulatory region 604815			178 bp distal