rs32565474 SNP Detail

Summary

• ID
  rs32565474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148941869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCCATC CTTGCCTGGG
  TTAAAGCCGG AGCTCCACGT CCATCTCCCT TAACCAATGC TTAAGACAGA GGTTGGGCAT
  GTGGTAGGTG CCAAGTGAGT GTTTGTTGAG TAAGGGGGTC AGAACCCTTT CCAGAGCTGG
  GCTAGTAGTG TCCTCAGTGT CGCTGCCTGA CTGTGCACAG CAGCCTCTGT GCTGTACTGT
  R
  GCCCTCTGCA GATGTCCTGA GTTCAATCCA GGAACAGGGA CCTCCAGGCT ACTGGGAGGC
  ACTCTGGATG GCAGGCAGGA AGCAGGGATC TGGCCTCGGT GAGCAGCCAG AGAGGTGGCT
  CCTCTGCAAC ATGCAGCTGA GGGGAACAGT TTTGACTAAT GGAGCTAAGA GTCCTCTTGT
  GGCAGCCCAA GGAACCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46698249	NES10931809	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32565474					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46698249	NES10931809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148941869 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr407036	regulatory region 407036	within coordinates
Rr604775	regulatory region 604775	318 bp proximal
Rr604776	regulatory region 604776	1837 bp proximal