rs32563666 SNP Detail

Summary

• ID
  rs32563666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148223986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTA GTGGTTAAGA CCACTGGCTG
  Y
  TCTTCCCGAG GAAGTGAGAG GTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45664187	mCV24936812	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147994279	ENSMUSSNP2156727	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T		C
ss321417608	CHEV_4_147513638	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32563666					SNP	C	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148223986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			337 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			755 bp upstream
Rr604600	regulatory region 604600			108 bp proximal
Rr604601	regulatory region 604601			163 bp proximal
Rr604602	regulatory region 604602			463 bp proximal
Rr604603	regulatory region 604603			676 bp proximal
Rr604604	regulatory region 604604			724 bp proximal
Tssr40254	transcription start site region 40254			951 bp upstream
Tssr40255	transcription start site region 40255			982 bp upstream
Tssr40256	transcription start site region 40256			1153 bp upstream
Tssr40257	transcription start site region 40257			1170 bp upstream
Tssr40258	transcription start site region 40258			1242 bp upstream
Tssr40259	transcription start site region 40259			1254 bp upstream
Tssr40260	transcription start site region 40260			1266 bp upstream
Tssr40261	transcription start site region 40261			1449 bp upstream