rs32560086 SNP Detail

Summary

• ID
  rs32560086
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43924416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTGCTGCTC AGTTCAGATT AATTACCGTC CAGATCATTT TTTAACTTTT CTTATTTGGT
  TTAATTTTGA TTTTGGAGTC TTCCTGCCTT ACTCTATCTA TAGTCAGGCT GGCCTTGACC
  TCATAGCAAT CCTCCTGCCT CAGCCTCCTG AGCAGAGATG ACAGGTATGA GCTGTCATGC
  CTGGCTTTTA ATGAGTTTTC TGACATGACT CAAGAATGAG CTGAATAAGG GAGAGGTTGA
  GGTCTAACTA TGTGATAATA AGTCAGAGGT CACACATGGG AAGGATGTGC TCATGAAGGT
  W
  TCCTTCAGCT AAGGAGCCAA GCCTTCCTCA AAACTAAGAA AAACTAGGAA AGACGTGTGT
  GTCTTATGTC TACATGTATG CATGCACCAC ATGCTTGCCT GGTACCCACG GAGGTCAGAA
  GACCCCTAGA ACTGGGGTTA CAGATGGTTT TCAGCCACCA TGTAGATACT AAAAACTAAA
  CCCATGTCCT CTGCAAGAGC ATCAAGTGCT TTTAACTATG TGCCCAGCTT TCCAGCCCTA
  AACTAAAAAA AAAAAAAAAA TGTTGGAAAC TCTCTGGTTA TTATAAGCCA AACACCACAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45663157	mCV22986126	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32560086					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43924416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591105	regulatory region 591105			1289 bp proximal
Rr591106	regulatory region 591106			1572 bp proximal