rs32559224 SNP Detail

Summary

• ID
  rs32559224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32252470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTTGTT TTTGTTTTTA
  ATTTGGGGTT TAAACCAAGG CTGATTTGCC GATTTCTTTC AAAGCAAGCT AGCAAAATGG
  CTGGGTATGA TGGTACAGGC TTGTACGTTC AGCAGCTGGG TGGTAAAGGC ATGAGGATCA
  CAAGTTCACG GCCATCCTTG AACTCTTTCC TTGGCTGCAT AGAGAGTTTG AGGCCAGCCT
  Y
  AGTGAGAACC AGTATGGTGA CTTTATTGAG AGAGAATGAG CTTATGATTT CTCCTTGTAT
  AAATATGGAG AGTTTGTCGT TCTTGAGGAC CTCCTCATAA GGAACATGGT CTCACTGGGT
  TCCAGGCTGC TTTTCCTGAT GTTAACACTA ACTCACTCTG ATTATGGGAA GGATTATTTC
  TTTTCTTTTC CAACATAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180382	NES12115538	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32559224					SNP	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180382	NES12115538	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32252470 () rs orientation: forward

Symbol	Name	Function Class
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404780	regulatory region 404780	738 bp upstream
Rr514698	regulatory region 514698	1790 bp distal
Rr514699	regulatory region 514699	385 bp proximal