rs32556891 SNP Detail

Summary

• ID
  rs32556891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32249884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCGGAGG TGGCATTGAC
  AAGAGGGCGG GCGGGAGGCG GGACTTCCGG TCCGCAGTCC GGTCAGATGT TTCCCGGGCG
  TCTCCCCGCA ACCCATTTGA CTTCGCTAGT CGGTGACGCG GCGCGGGGAA GGGATCCGAG
  GGGGACCGGA GCCTGGAGGA GTTGAGGTAA GGAAACTCCG GGTAGTGGGT GCTTTGCGAG
  R
  ACAAAGGCGG GCTGGGAGCG TGAGGGGGCT GCGACTGAAG AGTGGGCCAG TGACAGCTAG
  GGAAAGTGTG AAGCAGGAGG CTACTGTGAC CGAGGTACAA TGACAGCCAA GAGGACTGTG
  ACCCAGGGGT GGCCGCTTGT GAGGGGTCTG TGACCCCCGG AGCAGTAAAT GCGAGGGACT
  CTGACCTCGG AGAGCACGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180356	NES12115639	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32556891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180356	NES12115639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32249884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8190	CpG island 8190			within coordinates
Dynlt2b	dynein light chain Tctex-type 2B			1967 bp downstream
Gm53948	predicted gene, 53948			1802 bp upstream
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform			Intron
				mRNA-UTR
Rr404779	regulatory region 404779			10 bp downstream
Rr514694	regulatory region 514694			1659 bp distal
Rr514695	regulatory region 514695			398 bp distal
Rr514696	regulatory region 514696			within coordinates
Rr514697	regulatory region 514697			317 bp distal
Rr514698	regulatory region 514698			194 bp proximal
Tssr137979	transcription start site region 137979			448 bp downstream
Tssr137980	transcription start site region 137980			88 bp downstream
Tssr137981	transcription start site region 137981			76 bp downstream
Tssr137982	transcription start site region 137982			32 bp downstream
Tssr137983	transcription start site region 137983			12 bp downstream
Tssr137984	transcription start site region 137984			26 bp upstream
Tssr137985	transcription start site region 137985			159 bp upstream
Tssr137986	transcription start site region 137986			224 bp upstream
Tssr140804	transcription start site region 140804			12 bp downstream