rs32555292 SNP Detail

Summary

• ID
  rs32555292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150651509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA AGGAACGTGG CGTGTGATAG
  R
  ATTCCTGCCT TTGCAGCTTT TATAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss45662565	mCV23182722	ABI	CRAMUS_MOUSE	f	SNP	A			G	G
ss46716407	NES11011717	PERLEGEN	MM_PANEL2	f	SNP	A	G	G			G	G	G
ss148054965	ENSMUSSNP5799959	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs32555292					SNP	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716407	NES11011717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150651509 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	570 bp downstream
Rr605335	regulatory region 605335	417 bp distal
Rr605336	regulatory region 605336	1142 bp proximal
Rr605337	regulatory region 605337	1482 bp proximal
Tssr40415	transcription start site region 40415	558 bp downstream
Tssr40416	transcription start site region 40416	468 bp downstream
Tssr40417	transcription start site region 40417	1764 bp upstream
Tssr44743	transcription start site region 44743	176 bp upstream
Tssr44744	transcription start site region 44744	1648 bp downstream