rs32548668 SNP Detail

Summary

• ID
  rs32548668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175794116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGTTAC CCAATGTCTA
  CCGGGTCCGA TATTAAGAGT GTAGATATAA AACTGAAAAT GAAGGTTCCT GCCTTCACGG
  AGTTCCAGAA AGAGTCACTA CAACAGAGAT GGTAAGAAAG AGCACACTGG GATTTCATAC
  CCAAGCACCA GAGAGAAGGA TTTCCATCCC TGGCTCAATA TGTCAAGAAG AAGCTGTGCC
  Y
  TGAGTAAATG AGAGACACCC TCAAGCTTAA CTAGGACAAG AGAGATCCAG ATTCCAGGAA
  AGGAGAGCGA CACCTTGTGG TCTGAGATCA GGTTGGAAGT CTGGAATATT TGGGGTTGTA
  GTCAAGCTGC AAGGGAGTCT GAGGGGAGAC CAGCCTTGAG TTACTAACTG TCTACTTTGG
  GCAAAGCATA ATACTTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46695922	NES10661123	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32548668					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46695922	NES10661123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175794116 () rs orientation: forward

Symbol	Name	Function Class
Pld5	phospholipase D family member 5	Intron
Rr423867	regulatory region 423867	1219 bp distal
Rr423868	regulatory region 423868	64 bp proximal