rs32543775 SNP Detail

Summary

• ID
  rs32543775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150132285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TGCTGAAGTG TGAATTCCAA
  R
  CGCGTGGAGG ACTGGAGATG ACGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45661500	mCV23448181	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	A
ss46710993	NES11008632	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	G		A	A	G		G	G	A	G		G
ss148045840	ENSMUSSNP1113105	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321427738	CHEV_4_149421937	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32543775					SNP	G	G	A	G	A	A	G	G	A	A	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710993	NES11008632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150132285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	271 bp proximal
Gm13067	predicted gene 13067	367 bp upstream
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	501 bp upstream
Rr605155	regulatory region 605155	within coordinates
Rr605156	regulatory region 605156	686 bp proximal
Rr605157	regulatory region 605157	1275 bp proximal
Tssr40363	transcription start site region 40363	363 bp upstream
Tssr40364	transcription start site region 40364	450 bp upstream
Tssr40365	transcription start site region 40365	1345 bp upstream