rs32542536 SNP Detail

Summary

• ID
  rs32542536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88725423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGGCCCCGA AGCATCCTAC TGTACATCAT ACACTGCGAA AGATGTTTGA AAGAAAACCT
  GTGCTCTTGC ATTTGAGGTG GCTTCTGAAT AAATTGATGA TCTCGGTTTT CCTTGGGAGG
  TTTCGATCAC AGATGGGGGA TGCCCATGGG CCACGGGGGT TGGAAAACGT GCCTTGTTGC
  AGCAAGGCTC TCTTGGGCTG TTCGGTGTTA GAACCATTCT CTCTCCTGTC ATGGGCTTCT
  GGTTAGCTTC TTGTAACCTG GGAACTCCTT AATCTCAGAC TTTGCCCGGT CTCAGGTTTT
  Y
  TGTTTGTTTG TTTGTGTGTG TGTGTGTTTT TTGAAAATCT CCCTTGGAAG GAAGTTACTC
  CAGAGGTTGA TGAACCTCTT TGCTTGATCT TTGCATCTTG AAAAGAGAAA ATTCTCCTTA
  AAAAAAAAGC TATATTCTCC TTTCGTTGAA GACAGCTTTA TGTGCACAAA ATTCTCAAAA
  GTCTCCTTTG ATGCCAGTCT TTTTAGAGGG TAGGAGGTGG ACCTGAAATA TTAAACCCTC
  TGGCTCTATA GGCCTCAGGT TGGGAGAGAG GAATTTCCCA TCTCATGTTC CATCAACATG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45660966	mCV25216531	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32542536					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88725423 () rs orientation: forward

Symbol	Name	Function Class
Gm13288	predicted gene 13288	mRNA-UTR
Rr595116	regulatory region 595116	1645 bp distal
Rr595117	regulatory region 595117	1682 bp distal
Rr595118	regulatory region 595118	1169 bp distal
Rr595119	regulatory region 595119	1023 bp distal
Rr595120	regulatory region 595120	681 bp distal