rs32538260 SNP Detail

Summary

• ID
  rs32538260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116484013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC TAAGAGCCAA AACTACGACG
  R
  TCAGCGTGCA AAGCCCCGCC CTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45660156	mCV23197463	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147279898	ENSMUSSNP5704523	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	G
ss321277618	CHEV_4_116299421	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32538260					SNP	A	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116484013 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430091L06Rik	RIKEN cDNA A430091L06 gene			27 bp upstream
Nasp	nuclear autoantigenic sperm protein (histone-binding)			Intron
				Noncoding-Transcript-Variant
Rr398403	regulatory region 398403			within coordinates
Rr398404	regulatory region 398404			578 bp upstream
Rr398405	regulatory region 398405			1047 bp upstream
Rr597936	regulatory region 597936			within coordinates
Rr597937	regulatory region 597937			29 bp distal
Rr597938	regulatory region 597938			652 bp proximal
Tssr42894	transcription start site region 42894			551 bp downstream
Tssr42895	transcription start site region 42895			670 bp downstream
Tssr42896	transcription start site region 42896			1080 bp downstream
Tssr42897	transcription start site region 42897			1105 bp downstream
Tssr42898	transcription start site region 42898			1156 bp downstream