rs32524764 SNP Detail

Summary

• ID
  rs32524764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149680904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACATAC ACTTAAATAA
  ATTGACCTGT GGTTAGGAGC GTGGCTTAAT GCTAGAGCCC GTGCTCTGTC AATCTGTGTG
  CTTAATGCTA GAGCCCGTGC TCTTTCTGTG TGCTTGCTCT TTCTGTGTGC TTGCTCTCTC
  CTATTGCAAA AGCCAAAGGC ACCCAGGGGG CTGGGGAGGT GGCTCGGGCT AAGAACACAT
  R
  CTCAGGTTGG GTTCCCAGCA CCCACATGGC AGCTCACCTC CATCCATAAC TCCAGTTCCA
  AGGTATCCAA TGCCCTCAGC CCTCGGCAGG CAGTGCACGC ATGCAAAACA CTCATACACG
  CAAAATGAAG TAACATTAAA ACAGAGTACA GCCGTAGAGA CCTTGACTGC TGGGCAGGCA
  GGTACAGCTC AGTGGGTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45658524	mCV24956865	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148036669	ENSMUSSNP934973	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32524764					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149680904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clstn1	calsyntenin 1			Intron
				Noncoding-Transcript-Variant
Rr604980	regulatory region 604980			994 bp distal
Rr604981	regulatory region 604981			1424 bp proximal