rs32515883 SNP Detail

Summary

• ID
  rs32515883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138817523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCA CACACACAGT CTCTCCTCCA
  Y
  TCTCCACAAC TACCTCTCAG GTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45657058	mCV24615933	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147665132	ENSMUSSNP7020964	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321379338	CHEV_4_138646127	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32515883					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138817523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15160	CpG island 15160			1717 bp proximal
Nbl1	NBL1, DAN family BMP antagonist			Intron
				Noncoding-Transcript-Variant
Rr603103	regulatory region 603103			548 bp distal
Rr603104	regulatory region 603104			409 bp proximal