rs32509401 SNP Detail

Summary

• ID
  rs32509401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135901252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATGTCA GGGCCTCTGT
  TTCCTCTTCT TAAAAAAAAA AAGTTTTAAA ATTACATTTA TGTGGGGGAT GGGACCGTTT
  GTGCCACACT GTGTTTGGAG GTCAGAGCAC AACTTTTCAG AGTTGGTTTT CTTTTTCAGA
  GTGGGTCCTG GGGATCAAAC TCAAGCTGTT CAGCTTGGTG GCAAACTCCT CTACCCACTG
  R
  GCCATCTCGC CAGCCCCACC TTTCCTCTTC TAGAAAATAT ATCTTCCTTG GCTTGTCTCC
  TCTGTTAGTT CCAGGTTTGG AAGCAGGTGT CAAGGAGGGG AGATGGTATT TGTAGGGTAT
  GGTAAGTCTA GGGACAGGGA TAAGACCACC CTGTGTCCCC AGGGTATTTT GTCCGACCTG
  TGGCTCTGTC TTTTCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45656281	mCV22914097	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss147560438	ENSMUSSNP2202358	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32509401					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135901252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	524 bp distal
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	1487 bp downstream
Rr398609	regulatory region 398609	646 bp upstream
Rr602302	regulatory region 602302	1537 bp distal
Tssr39670	transcription start site region 39670	1653 bp downstream
Tssr39671	transcription start site region 39671	1546 bp downstream
Tssr39672	transcription start site region 39672	1514 bp downstream
Tssr39673	transcription start site region 39673	1499 bp downstream
Tssr39674	transcription start site region 39674	1362 bp downstream
Tssr39675	transcription start site region 39675	1188 bp downstream
Tssr39676	transcription start site region 39676	1081 bp downstream
Tssr39677	transcription start site region 39677	985 bp downstream
Tssr39678	transcription start site region 39678	763 bp downstream
Tssr44029	transcription start site region 44029	1618 bp upstream
Tssr44030	transcription start site region 44030	1337 bp upstream
Tssr44031	transcription start site region 44031	894 bp upstream