rs32506899 SNP Detail

Summary

• ID
  rs32506899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148224770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGG GAGGAGAAAA CACAGCGATC
  R
  TACGCAGAGG CCATGGAAAT CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45656895	mCV24936830	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss147994309	ENSMUSSNP5131977	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss321417613	CHEV_4_147514422	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32506899					SNP	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148224770 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			within coordinates
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			within coordinates
Rr604600	regulatory region 604600			655 bp distal
Rr604601	regulatory region 604601			121 bp distal
Rr604602	regulatory region 604602			300 bp distal
Rr604603	regulatory region 604603			87 bp distal
Rr604604	regulatory region 604604			within coordinates
Tssr40254	transcription start site region 40254			167 bp upstream
Tssr40255	transcription start site region 40255			198 bp upstream
Tssr40256	transcription start site region 40256			369 bp upstream
Tssr40257	transcription start site region 40257			386 bp upstream
Tssr40258	transcription start site region 40258			458 bp upstream
Tssr40259	transcription start site region 40259			470 bp upstream
Tssr40260	transcription start site region 40260			482 bp upstream
Tssr40261	transcription start site region 40261			665 bp upstream