rs32505331 SNP Detail

Summary

• ID
  rs32505331
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98284040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CCTCCGGCGA GGTGGAGAGC
  S
  GCCCAGGTGA GGAGGCGGCC GCACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45656027	mCV23913137	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss321220824	CHEV_4_98062494	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs32505331					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98284040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patj	PATJ, crumbs cell polarity complex component			mRNA-UTR
				Noncoding-Transcript-Variant
Rr376896	regulatory region 376896			within coordinates
Rr595734	regulatory region 595734			within coordinates
Rr595735	regulatory region 595735			100 bp proximal
Tssr37875	transcription start site region 37875			7 bp downstream
Tssr37876	transcription start site region 37876			14 bp upstream
Tssr37877	transcription start site region 37877			88 bp upstream
Tssr37878	transcription start site region 37878			575 bp upstream