rs32500456 SNP Detail

Summary

• ID
  rs32500456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148245746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TCAGACCTGC CTGCCTTGAC
  Y
  CTTATCCCTT CCTCACTAAC TATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45655706	mCV24937569	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147994695	ENSMUSSNP2919454	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	C
ss321417744	CHEV_4_147535398	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32500456					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148245746 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			245 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1083 bp upstream
Rr398857	regulatory region 398857			960 bp downstream
Rr604608	regulatory region 604608			658 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			1093 bp downstream
Tssr40264	transcription start site region 40264			659 bp downstream
Tssr40265	transcription start site region 40265			637 bp downstream
Tssr40266	transcription start site region 40266			609 bp downstream
Tssr44596	transcription start site region 44596			1687 bp upstream
Tssr44597	transcription start site region 44597			1470 bp upstream
Tssr44598	transcription start site region 44598			1452 bp upstream
Tssr44599	transcription start site region 44599			1359 bp upstream
Tssr44600	transcription start site region 44600			1217 bp upstream