rs32500277 SNP Detail

Summary

• ID
  rs32500277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144918081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTTCGG ATGCTGCTTG
  GCTATCTTGT GAGGAGGGTC TGTAGAAGCT GATAAGCATC TTACAATATT CACGACAACC
  CCAATCAGCA AAGACTAATC CAAGCAGAAA ATATTCAAGA GGCTATGTGA ATGAAATTCA
  CACTCTACAA CTCTAATTAG GGTGTCCTAA TTAAAATTAG CAAATTTATT CATTAGGCTC
  R
  TTCATAAAAA TCACCTAAAT GGAAGAGAAA GGCAATGCTT TATCACTGAC CTTTTTTTTT
  TTTTCTTTTA GACCAGAGTC TAATATATCC AAGGCTGGTC TTGAACTTAC CACATAGCTG
  AGGACATATC CTTGAACTTC TAACTCTCCT GTTCACCTTC TTAGGAGGTG CTGGGATTAC
  AAATCTGCAC CATCACATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45655810	mCV22764400	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss147848291	ENSMUSSNP4897807	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32500277					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144918081 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr604318	regulatory region 604318			1143 bp proximal
Rr604319	regulatory region 604319			1958 bp proximal
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant