rs32499772 SNP Detail

Summary

• ID
  rs32499772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172525624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG GATGGGCTGG GCCCGAGGCA
  R
  GCGTTCCAGG ACTCCTTGTC CTTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45154979	mCV24592110	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss146199168	ENSMUSSNP5408161	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320126980	CHEV_1_174628188	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32499772					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172525624 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			mRNA-UTR
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			1172 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			1020 bp proximal
Rr423653	regulatory region 423653			285 bp distal
Rr423654	regulatory region 423654			within coordinates
Tssr10246	transcription start site region 10246			within coordinates
Tssr10247	transcription start site region 10247			932 bp upstream
Tssr10248	transcription start site region 10248			998 bp upstream
Tssr10249	transcription start site region 10249			1022 bp upstream
Tssr10250	transcription start site region 10250			1077 bp upstream
Tssr10251	transcription start site region 10251			1133 bp upstream
Tssr10252	transcription start site region 10252			1199 bp upstream
Tssr10253	transcription start site region 10253			1248 bp upstream
Tssr10254	transcription start site region 10254			1313 bp upstream