rs32493250 SNP Detail

Summary

• ID
  rs32493250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:120525002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCTTCCCT GGGCCCCTGG CCCGGGGGAG GGAAGGATTT
  TACACCTAAC CCCTGCAGAG TGGAGCCATG CTCCCGCTGG CCTCTAAAAC CAAAATAAAA
  Y
  TGGGTTGCTT TACAATTTTG AGTTTCCATT TCCTTTTCAT CCCCACCCTC AAGTACCTGT
  AACTTGCAAA AAGTCTGAGG CTGTTAGAGT CCCAAAGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45655195	mCV24855333	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147346025	ENSMUSSNP4779330	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss321286010	CHEV_4_120340410	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32493250					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120525002 () rs orientation: forward

Symbol	Name	Function Class
Cited4	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	mRNA-UTR
Cpgi14717	CpG island 14717	110 bp distal
D4Dcr19	DNA Segment, Chr 4, Derry C. Roopenian 19	1982 bp distal
Rr398439	regulatory region 398439	1168 bp downstream
Rr598840	regulatory region 598840	1223 bp distal
Rr598841	regulatory region 598841	926 bp proximal
Rr598842	regulatory region 598842	1746 bp proximal
Tssr38800	transcription start site region 38800	1226 bp downstream
Tssr38801	transcription start site region 38801	1182 bp downstream
Tssr38802	transcription start site region 38802	862 bp downstream
Tssr38803	transcription start site region 38803	633 bp downstream