rs32490668 SNP Detail

Summary

• ID
  rs32490668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5510171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCGTGG AAATAGAGTT
  CTCTGGGGGA AAGGTTACAC CAACCCTAGA ATAGCCCATG ACTATTCCAA CAGCATCCAA
  GTAGGAGTCT AATGTGCCTT TTCTAAATTC TGTTGCCCAA GTGGAAAAAC AGGTTGTGAA
  GTGCAGTAGG GGCCACCCAG TACTGACTGA GAGGAACTGA ATGTCTTGCA GGCTCATATA
  K
  TTATACTAGA TAAATAGAAT ACATAACAGA AAGGGGAGAG ATTCTTTTAA AAAATCTATT
  ACTATAAAAA GAACCTGTGA GTTTTCTTAC TACTAGTTCT AGACTAGAGC AGTAGCCCAT
  CTTCAGGCCA GGCTACTAAA GACACTTCAA AACATGCTAT AAACTCCCGA CTTAGCAAAC
  ACTATAGCCC GTGTTCCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729375	CHEV_6_5460171	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32490668					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5510171 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	1961 bp distal
Rr626155	regulatory region 626155	within coordinates
Tssr1775	transcription start site region 1775	966 bp upstream
Tssr54862	transcription start site region 54862	977 bp upstream