rs32489823 SNP Detail

Summary

• ID
  rs32489823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5498501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAAGCAT GTAGGAAATG
  ATCATGTTTT CTTGGGACTG TATTTTCTTT TTTTAATGCT AACAATTTTA CTCTTAAATT
  AATATAAATT ATGATTAATT AATTGTAAGT TTTGCTTGCA AGAAAGTCAG TCCCATTGAT
  ATGTTTCACA TGTGGATGCT TGAGTGGCAG ACTCTCTTTG ATGAAGCAAG TAGAAAGTAG
  R
  CATTCCCCTT TTACCCTGGA CACACAATCA CAATCCTATT TCCTTTCAGG CATCATCCGA
  TGCCACAAAG AATGATATTC TTATCTAGAG AGGGAAGGAA AGAAACTGTA GGATACAATA
  CGTAGGTTTC ATATAGAAAG TCCCATTTTC TCAAGCCTAT TGTGTGCTCA GCAATACCTT
  ATGGTGTTGT GTGGTGACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729297	CHEV_6_5448501	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32489823					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5498501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	1861 bp distal
Rr378865	regulatory region 378865	1000 bp downstream
Rr626152	regulatory region 626152	1702 bp distal
Rr626153	regulatory region 626153	215 bp proximal