rs32489820 SNP Detail

Summary

• ID
  rs32489820
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5497644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGACTGG GGTGTTATGA
  AAGTCATAGA TGACGGTGGG TGCACTCTTT GCATTTTCCC CCATGAGAGC TCACCCAGTC
  ACAGGACTGA TGTCTGATTT CTGCCTCTAG TTCAAACTCT GCCCCAGATT CCAGTGCTCT
  GCTGTTTAGT GGACTTGTGC AGGCACAGGT CTAGCATCAA AGTTCCTCCT CTTAAACCTA
  S
  CACCAATACT GGGGGTCTGC CTAATGTTGT GTCCACTTGT GTGACTTGCT TAGAAATAAC
  ACGTTGGCTT TCTGTCCATC CCACCACCTC TGTCTAGTGG TCACATATAA GTTCTAGCAT
  TTATGCCTGC CATTGTGTCC AAGCATTTTG CTCAGACCTA TGGGGGAAAA AATCCAATGG
  AGACCTTCAA CAGTCACGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729295	CHEV_6_5447644	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32489820					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5497644 () rs orientation: forward

Symbol	Name	Function Class
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	1366 bp upstream
Rr378865	regulatory region 378865	143 bp downstream
Rr626152	regulatory region 626152	845 bp distal
Rr626153	regulatory region 626153	1072 bp proximal
Tssr59753	transcription start site region 59753	1792 bp upstream
Tssr59754	transcription start site region 59754	1763 bp upstream
Tssr59755	transcription start site region 59755	1712 bp upstream
Tssr59756	transcription start site region 59756	1354 bp upstream
Tssr59757	transcription start site region 59757	1328 bp upstream