rs32489816 SNP Detail

Summary

• ID
  rs32489816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5497089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGAAAA TCCCAGTTCA
  CTTCTCTCCT GTAACACTTT CTACCTGTTA ATTAAATGCA AACTAAAGAG CGATTTGCTG
  AGGGTTTGGC TGGCCCTGTA GTCCCCCTTC CCTGTCATTC CCCTCTTTCT CTAAGGCCTT
  CTAGTTTGCT CTTGACCGCC CTCCACTCCC CAGTCTGCTC CAAAAGCTCT TTCTTCATTG
  Y
  GGCTGCCCTC CTTCCAAAAA GCAGCCTTTG TCACTAGCAG GCACCAGTAG CATATTTTAG
  TTATTTGGGC TCTTTCATTT CCCAGAGGCT CAGTGCATCC TACCCTACTT TGTTACTGCC
  CAATATTGAC CTCCCTAATG ACTGCTGTTG AAACATGCTA GCGGGTCATA ACACTCTCAT
  CCTAACCTCT CTCGTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729293	CHEV_6_5447089	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32489816					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5497089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	449 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	811 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	290 bp distal
Rr626153	regulatory region 626153	1627 bp proximal
Tssr59753	transcription start site region 59753	1237 bp upstream
Tssr59754	transcription start site region 59754	1208 bp upstream
Tssr59755	transcription start site region 59755	1157 bp upstream
Tssr59756	transcription start site region 59756	799 bp upstream
Tssr59757	transcription start site region 59757	773 bp upstream