rs32489815 SNP Detail

Summary

• ID
  rs32489815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5497032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTTAG CGAACAGCTC
  AAGTTTAGAA ACTGCCTAAA TAGGCTTATT ATTAATGTGG TGGAAAATCC CAGTTCACTT
  CTCTCCTGTA ACACTTTCTA CCTGTTAATT AAATGCAAAC TAAAGAGCGA TTTGCTGAGG
  GTTTGGCTGG CCCTGTAGTC CCCCTTCCCT GTCATTCCCC TCTTTCTCTA AGGCCTTCTA
  R
  TTTGCTCTTG ACCGCCCTCC ACTCCCCAGT CTGCTCCAAA AGCTCTTTCT TCATTGCGGC
  TGCCCTCCTT CCAAAAAGCA GCCTTTGTCA CTAGCAGGCA CCAGTAGCAT ATTTTAGTTA
  TTTGGGCTCT TTCATTTCCC AGAGGCTCAG TGCATCCTAC CCTACTTTGT TACTGCCCAA
  TATTGACCTC CCTAATGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367251238	MGP_WTSI_6_5447032	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32489815					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367251238	MGP_WTSI_6_5447032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5497032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	392 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	754 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	233 bp distal
Rr626153	regulatory region 626153	1684 bp proximal
Tssr59753	transcription start site region 59753	1180 bp upstream
Tssr59754	transcription start site region 59754	1151 bp upstream
Tssr59755	transcription start site region 59755	1100 bp upstream
Tssr59756	transcription start site region 59756	742 bp upstream
Tssr59757	transcription start site region 59757	716 bp upstream