rs32489539 SNP Detail

Summary

• ID
  rs32489539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106715689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT CTCGGATCTT GCCTGCAGGC
  R
  TAGCCGGAGT CGGCAGGCGC AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45654471	mCV22728887	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147172855	ENSMUSSNP876840	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321247420	CHEV_4_106531097	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32489539					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106715689 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	within coordinates
Gm69780	predicted gene, 69780	779 bp downstream
Gm70282	predicted gene, 70282	1349 bp upstream
Rr376973	regulatory region 376973	506 bp upstream
Rr596849	regulatory region 596849	1110 bp proximal
Rr596850	regulatory region 596850	1360 bp proximal
Tssr38192	transcription start site region 38192	1229 bp upstream
Tssr42651	transcription start site region 42651	885 bp downstream
Tssr42652	transcription start site region 42652	1095 bp downstream
Tssr42653	transcription start site region 42653	1106 bp downstream