rs32489537 SNP Detail

Summary

• ID
  rs32489537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143004597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA TCTTAACGGC GAAGTGTCAC
  K
  GCTTGCATCT GTCTCCCCAG ATTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45654466	mCV25395112	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss45655096	mCV23739290	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
ss147778509	ENSMUSSNP7186359	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss321403672	CHEV_4_142867930	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32489537					SNP	G	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143004597 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	255 bp proximal
Rr604184	regulatory region 604184	1466 bp proximal
Tssr44444	transcription start site region 44444	1921 bp upstream
Tssr44445	transcription start site region 44445	1861 bp upstream
Tssr44446	transcription start site region 44446	871 bp downstream