rs32489510 SNP Detail

Summary

• ID
  rs32489510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCAGCCA TAGGGATATA
  TCTCCCAGAA AGAGATTTCG CACAGTTCTG AAGAGGTTTT TGGACCACCT GGCAGGCAAG
  ACAGGGGCTG GCTCAAAATG AGGACCCACC CAAACTTGAT TATGCTCTTA TTTCTGTTTA
  TACCCAGAGA TAGACTTGGG AGGGGGTACT AGACTGCTTG ACAATGTGGG CAATGGAATA
  Y
  GTCTTCCTCT GTTTTTCTTG TCTCTGTAAT TACCCTGTTG AGGATTGTGG AGGAGCCTGG
  TTTGTTAGGG CTTCCAGGGC CCAGGCTCTG ACCCTAACAA CTCTTCTAAC ATCTTCAATT
  TTAATATCAC CACACAGACA TACAGTTCTT TCCTCTGCTC TAAAAATAAA TTAGAGGAGC
  CGAAGTGCTG AGTTCAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729363	CHEV_6_5459227	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32489510					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509227 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	1017 bp distal
Rr626155	regulatory region 626155	5 bp proximal
Tssr1775	transcription start site region 1775	1910 bp upstream
Tssr54862	transcription start site region 54862	1921 bp upstream