rs32489443 SNP Detail

Summary

• ID
  rs32489443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139340182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CAGTGGTGGC TTTGGGCAAG
  Y
  GTGTTTCCTC CTGAGCTGTG CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45654335	mCV22729051	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147675959	ENSMUSSNP79875	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321382807	CHEV_4_139168786	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32489443					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139340182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	1961 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr377285	regulatory region 377285	1618 bp downstream
Rr603258	regulatory region 603258	754 bp distal
Rr603259	regulatory region 603259	968 bp distal
Rr603260	regulatory region 603260	1714 bp proximal