rs32488392 SNP Detail

Summary

• ID
  rs32488392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150205983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAGCGCA CGCCTTTAGT
  CCCAGCACTT GGGAGGCAGA GGCAGGTGGA TTTCTGAGTT CAGGGCCAGC CTGGTCTACA
  GAGCGAGTTC CAGGAAAGCC AGGGCTATAC AGAGAAACCC TGTCTCGAAA AAAAAAAAAA
  AACCAAACAA ACAAAAAAAT GTTACATGAA TTGATGAACA CATTCAAGGA ATTTGCATTT
  Y
  AATCCTTCCC ACGGCGTTTG TTTGTATGTG GCTAGGGAGG AGCAGGCATC TGTGCAAAAT
  ATTATTTACC AAGGTCCGTA ACACATGGAC TGGAAGCTTG GCCTATGGCA TAGAGGGTGG
  GCGTGGTCTT AGGAGGGAGA AGCACCTGTG ATTGGTTCCA GCTCATCGCC CGTTTAGCTG
  CAGCTAAAAC CTTGGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45654222	mCV24960476	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss46711947	NES11005673	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	T	T	T	T	T
ss148048072	ENSMUSSNP171572	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32488392					SNP	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711947	NES11005673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150205983 () rs orientation: forward

Symbol	Name	Function Class
Rr605189	regulatory region 605189	553 bp distal
Rr605190	regulatory region 605190	567 bp proximal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	Intron
Tssr40374	transcription start site region 40374	821 bp downstream