rs32487050 SNP Detail

Summary

• ID
  rs32487050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141231574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACTGGG TACACCTGAG
  GCAGCCTGTG TCAATGCCTA AGCCAATATA CTTTGAGGTT TTGTCCTTCC CAAATGTAAC
  TTTACGCTAA CTCTCCGTCC TGTCCAGGAC ACGAGAGAAG CCCGCTCGTG CCTACTTCGG
  AACATTCTTT GGAAGTCTCC CCGGGCCCAA GAGGTCTGAA AGGCACTCAG CTACCCAGAG
  R
  CAGCTTAGCT TTACAACTTG GGGACACTGG CTTATTATTG AAAAACCTCG GCCTAAAGCT
  GTTCCCTCTA AATGCGGCCA TTTCTTTAGA ATTTTCACCA AAGACACAAA GCCATAATGC
  ACAATGGCTG TGGCACTGTG ACAGGGCACA TTCAAAAGCA GCTGTCCCTG CGAGAATCAA
  GAGGATCCCA GGAGGCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45654303	mCV22902694	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss321387721	CHEV_4_141060178	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32487050					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141231574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			296 bp proximal
Rr603781	regulatory region 603781			1669 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant