rs32485992 SNP Detail

Summary

• ID
  rs32485992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129824137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCACTTAA CAGAAGTAAA CTCCAGTGTC TCTTATTGAG
  CGTCTTCTCT CGGACTTGTT CTGTTTGGTT TGTTGGGGAC TGAACCCAGG GCCTCACACA
  Y
  GCTAAACAGA CACTCTATGA CTAAACCGCA TCCCCCAAGC CCCTTTTATT TTGATATGGG
  GTTCTCACTA AGTTGCCTAG GCTGGCTTTG AACTCACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45654497	mCV24826238	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147454579	ENSMUSSNP4006353	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321316120	CHEV_4_129607588	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32485992					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129824137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1626 bp distal
Rr600387	regulatory region 600387	1427 bp distal
Rr600388	regulatory region 600388	1705 bp distal
Rr600389	regulatory region 600389	1674 bp proximal
Spocd1	SPOC domain containing 1	Intron
Tssr39208	transcription start site region 39208	1574 bp downstream
Tssr39209	transcription start site region 39209	1544 bp downstream