rs32480500 SNP Detail

Summary

• ID
  rs32480500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108488725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGCACCAA ACTGTTTACA AGGCTAGAAC CTACAGGCTC
  TGCCTTTCTT TGGTGGATGA CAGTCTGAAT TGAAGGCAGT GAGATCCAGA GAGGAAGCCT
  R
  CCCTGGGCTT CCATTTCCAC TTGCCCAAGA ATTCTAACCC TGTCCTTGCC TGCTCTCCTC
  CTTGCAGAAT TTGAACAAGT TTTCAAGCTA AACATCAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45653608	mCV22674772	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147188662	ENSMUSSNP6924972	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs32480500					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108488725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr597206	regulatory region 597206			983 bp proximal
Tssr38309	transcription start site region 38309			1557 bp upstream
Tssr38310	transcription start site region 38310			1568 bp upstream
Tssr38311	transcription start site region 38311			1592 bp upstream