rs32477299 SNP Detail

Summary

• ID
  rs32477299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154628192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTGCCACC TTGTGACCTG GCTCCCAGGG GCCAGGCAGA TAGTTGGGGG GGGGGGCTAC
  ATTTCCCAGG GGGCACATGC TTTCATTTTT TGTTTTTGTA TGTTTGTTTG TTTGTTTGTT
  TTTCTGTTCT CCCTCCAAAT GATGTCCACA AGCTGGGGCA GTCTGGTGTT TGCAGGGATG
  AAAGATCAGC CTGAGCGCAC CCCTCCCTCC ACAGACCAGA GCCCCCTCCC TATGGGACTG
  GGGGCGGTAC CCTCTACTGC CCACCCCCAA GCTGCTTCCT CCTCCTCCAC TCCCCTTCCA
  R
  AAGGCTGCAG GTGAATGGCC GCCTGGCCCT CTGGCCCATT CTGTCTAATA AAGACGTTTA
  TAGTTTTAAC CATCAAATAA AGTGCTAACT CCTCCTGTTT CTTCTCTGCT CTGCCACTCT
  GCAGCTTCAT TTAGCAAGCC AGTGGTGAGA AGGGGGGCGG GGGGAGAGGA GAAGGAAAGA
  GAAAGAAAAA AAAATTCATT AATTTTTATT AACAGGGAGA GCCATTTGTT CCCTGTGACA
  ATATTTGACT TGTCGAAATG ATTTTCACCT CTGCCACGAG GTGCGCGCTC TCCACATACA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45652581	mCV22967921	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32477299					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154628192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70000	predicted gene, 70000			1830 bp downstream
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606204	regulatory region 606204			284 bp distal
Rr606205	regulatory region 606205			within coordinates
Rr606206	regulatory region 606206			1284 bp proximal