rs32477272 SNP Detail

Summary

• ID
  rs32477272
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108287598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGAAAGCTA AATGTACCAT ATAACCTGTT TCCAGGTCTG TGTAGGGGAT ATTCCCAGCA
  CCCAGAAGTC TTCCTCATTT CACCTTCTAG CTCCTGCCAC TCCGATTCTG ACAATGTGGA
  CCAGTTTACC TTTGCTCATC CACTGGAGTC ATGTAGATGC ACTAGATATA CCCCTCCCCT
  CCCCCCCCCC CCGCCCTGCT TCTCTTACCC ATTCAACATC CATTCACAGT ATTGCTTACT
  TTTGTGTATA GTTGTAGATT ACTCATTTTC ACTGGATACA TTTTTTTTTT TTTTTTTTTT
  K
  GGTTTTTCAA GACAGGGTTT CTCTGTGTAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA
  CCAGGCTGGC CTCGAACTCA GAAATCCTCC TGCCTCTGCC TCCTGAGTGC TGGGATTAAA
  GGCGTGGGCC ACCACGCCCT GCTGGATGCA AACTTTTTTT TAATAAAGTT TTTATTAAAC
  TTCATGAATA TTCTACAGTC TGTCCACTTT GTTTATAAGC ACTCTGCGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTA AGGTGGATGT GTGTAGAGGT CAGATGTGTC AACCTTGGAT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45652731	mCV22675524	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs32477272					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108287598 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	904 bp upstream
Rr597185	regulatory region 597185	484 bp proximal
Rr597186	regulatory region 597186	987 bp proximal
Tssr38291	transcription start site region 38291	974 bp upstream