rs32472593 SNP Detail

Summary

• ID
  rs32472593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119671535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAACAAACAT GTGCTTCGCA TATATCCTGT ATTTGCATAT GTTTCTCCCA CCATGTAATG
  TATTATCCAT GTGTGCAGAT ATATGGATGT CAATGAACAT TGTTACTGCC TGCTATTTGC
  CCTGTGTGGC AATAGGCCTG GTGCTGCCTG CCTTCTTTCA GTATTCCCAG CCATGCTATT
  CAAGTGATAA TTGGTGTACT GTATCTTTAA AAGGTTAAAA CCCCTTAAAA AAAAAAAAAA
  AAAAAAGGTC TGGACTCCTA GTGGAAAAGA CAAGCGGGGC ATGGGTTGGC TCTGGATTCA
  R
  AAAGCAGCTG CTGATTAGAT TCTGTGTCTG CGGGCTGAAT TTATTCCGTG TTTCCAGCAG
  GAATTCAAGA GGGATGCTTC TGTTTGGGTT TCTGATCGTG ATTTATATTT ATTCAGAGGA
  ATAACAGAGG GTGGATCTGT TCCCGGCGCG AGCATGCTCA CCACCAGCCG ACTCTCCCAT
  TATCCCCCTG CCTAGTTTGG TGCTCCAGTG TACATGAGTA TTCCGTGTGC ATATGTGTGT
  ATACAAACAC GCATGCACGC CTGGATGGAC AGACATACGC ACAGGTTATT TCTTAAGAGC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45652628	mCV23157363	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32472593					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119671535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14707	CpG island 14707			453 bp proximal
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			1195 bp downstream
Rr398436	regulatory region 398436			638 bp downstream
Rr598655	regulatory region 598655			1334 bp distal
Rr598656	regulatory region 598656			within coordinates
Rr598657	regulatory region 598657			168 bp proximal
Tssr38753	transcription start site region 38753			1235 bp downstream
Tssr38754	transcription start site region 38754			within coordinates
Tssr38755	transcription start site region 38755			37 bp upstream
Tssr38756	transcription start site region 38756			166 bp upstream
Tssr38757	transcription start site region 38757			195 bp upstream