rs32471800 SNP Detail

Summary

• ID
  rs32471800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138452086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA ACCACAAGCC ACCAAGTGAG
  Y
  GAAGAGAGAG AACCGGGGTT GATTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45652223	mCV24059830	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147655255	ENSMUSSNP3154272	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321376516	CHEV_4_138280690	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32471800					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138452086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			550 bp upstream
Rr602997	regulatory region 602997			1001 bp distal
Rr602998	regulatory region 602998			431 bp distal
Rr602999	regulatory region 602999			within coordinates
Rr603000	regulatory region 603000			71 bp proximal
Rr603001	regulatory region 603001			561 bp proximal
Rr603002	regulatory region 603002			941 bp proximal
Tssr39875	transcription start site region 39875			507 bp upstream
Tssr44173	transcription start site region 44173			435 bp downstream
Tssr44174	transcription start site region 44174			487 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant