rs32470192 SNP Detail

Summary

• ID
  rs32470192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148242934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CTCACAGCCA GTGTTTAGGA
  Y
  GCATACTGTG GTCATCTAAT AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45652395	mCV24710878	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147994680	ENSMUSSNP1099017	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321417734	CHEV_4_147532586	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32470192					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148242934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo44	F-box protein 44			Intron
				Noncoding-Transcript-Variant
Rr398857	regulatory region 398857			1551 bp upstream
Rr604608	regulatory region 604608			1108 bp proximal
Tssr40263	transcription start site region 40263			1670 bp upstream
Tssr44596	transcription start site region 44596			1094 bp downstream
Tssr44597	transcription start site region 44597			1331 bp downstream
Tssr44598	transcription start site region 44598			1343 bp downstream
Tssr44599	transcription start site region 44599			1361 bp downstream
Tssr44600	transcription start site region 44600			1554 bp downstream