rs32466809 SNP Detail

Summary

• ID
  rs32466809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105735529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTAAATTA ACCCTCGGGA CTCCATGCTC TCGGGGGGGG
  GGGGGGTTTC TTGGGACCTT GCAAAAAGGA TGGAGCATAT GGTAGGAAGT ACCCCTGTGA
  Y
  AACATGGGCT CAAATGAAAT TTCAAGGATC ATAAATCCTC CTGTTTCTTC TCATAATTTG
  ATGAACAGCT GGTACCAGGA AGTATAACAT TCCTCGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49357225	NES12549793	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	C	T	C	T		C		T	C	T		C
ss146766030	ENSMUSSNP5778269	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T										C
ss324800372	CHEV_14_105897312	CHEVERUD	SCREENING_POP	f	SNP										T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32466809					SNP	T	T	T	T	T	C	T	C	T	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49357225	NES12549793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105735529 () rs orientation: forward

Symbol	Name	Function Class
4930449E01Rik	RIKEN cDNA 4930449E01 gene	693 bp upstream
Gm62338	predicted gene, 62338	within coordinates
Rr497222	regulatory region 497222	142 bp proximal
Rr497223	regulatory region 497223	701 bp proximal
Rr497224	regulatory region 497224	1113 bp proximal
Rr497225	regulatory region 497225	1447 bp proximal
Rr497226	regulatory region 497226	1756 bp proximal
Tssr127089	transcription start site region 127089	1723 bp upstream
Tssr127090	transcription start site region 127090	1904 bp upstream