rs32466021 SNP Detail

Summary

• ID
  rs32466021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105737475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGTCGGA AACTCAGTTA
  AACCCTGAAG GGGAAAGACA GGCACAAGAA GGAACCACAC AAAAGTCAGC GTCTTCTCCG
  ACGGGGGTGT ACACAGTTAT CTTTCTGAAC ATCAGAAGCT GAGAGAGAGA CCACCAGAAA
  ATTCCTGCTT TATCTATGAG GGCGGAAAGA CAGATAGACG CTTTCCTGAC CCACTGGCTT
  Y
  TCTTCCCTAG ACTCCAAGGT GTCTTCATCA TAGTGGGCTA GGAGGGAAAG AAAAATGTGA
  TTCCTAAATC TATACAACCG GGGAGTGTAT TACATGATAG CATAGGAAAA ATTCACACAC
  ACACACACTC ACTCACATAC AAACATACAC ACTCACACTC ACACACACAC ACACACACAC
  ACACACACAC ATACAAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49357217	NES12549801	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32466021					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49357217	NES12549801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105737475 () rs orientation: forward

Symbol	Name	Function Class
4930449E01Rik	RIKEN cDNA 4930449E01 gene	within coordinates
Gm62338	predicted gene, 62338	293 bp upstream
Rr497222	regulatory region 497222	1246 bp distal
Rr497223	regulatory region 497223	1107 bp distal
Rr497224	regulatory region 497224	500 bp distal
Rr497225	regulatory region 497225	191 bp distal
Rr497226	regulatory region 497226	within coordinates
Rr497227	regulatory region 497227	1237 bp proximal
Tssr127089	transcription start site region 127089	188 bp downstream
Tssr127090	transcription start site region 127090	within coordinates