rs32460943 SNP Detail

Summary

• ID
  rs32460943
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174421008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG AGAAAATGTT TGTGTGATGA
  M
  GTGTCTAAGC ACATCCCAGG GGTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45150574	mCV24603845	ABI	CRAMUS_MOUSE	f	SNP		A					C		A
ss49534522	NES12820203	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	C	A	C		C		A	A		C	C	A		C
ss146288728	ENSMUSSNP4697585	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320142619	CHEV_1_176523573	CHEVERUD	SCREENING_POP	f	SNP												C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32460943					SNP	C	A	A	C	A	C	C	C	A	A	A	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49534522	NES12820203	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174421008 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423776	regulatory region 423776	821 bp distal
Rr423777	regulatory region 423777	560 bp distal
Rr423778	regulatory region 423778	1612 bp proximal
Rr423779	regulatory region 423779	1701 bp proximal