rs32460206 SNP Detail

Summary

• ID
  rs32460206
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150270817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA CTTTCCTCTG CAAGTTCCAT
  W
  CCCTCATCTA TGACCCTCAG AATAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45650798	mCV24222044	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					T		A
ss46712313	NES11002205	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A		A	A	A	T		A	A	A	A		A
ss148049600	ENSMUSSNP1777056	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
ss321428591	CHEV_4_149560469	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32460206					SNP	A	A	T	A	T	A	A	T	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712313	NES11002205	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150270817 () rs orientation: forward

Symbol	Name	Function Class
Car6	carbonic anhydrase 6	655 bp downstream
Rr605217	regulatory region 605217	153 bp proximal
Rr605218	regulatory region 605218	360 bp proximal
Tssr40380	transcription start site region 40380	1056 bp upstream
Tssr40381	transcription start site region 40381	1065 bp upstream
Tssr40382	transcription start site region 40382	1083 bp upstream
Tssr40383	transcription start site region 40383	1097 bp upstream
Tssr44720	transcription start site region 44720	1030 bp downstream