rs32454557 SNP Detail

Summary

• ID
  rs32454557
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150370105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGTTT TTGTTTTTTC
  GAGACAGGGT TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCGCTCTGTA GATCAGGCTG
  GCCTCGAACT CAGAAATCCG CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCGTGTG
  CCACCACGCC CGGCTATATT CCAGTACTTT TTCACTTAGT GGGTAGTAAA CCAAGTTTTT
  K
  AAAAAGAAGA CAGTATCCAC AGCCAGGTCC TGCAGTATAA TACACATAAT GTCAAGCTGA
  TACTGAAGAG CAGGGTCAGG GGCTGGAAGA TCAGGCGTCC TGCACATGAG CTGCACCCTC
  AGACTGGTGT GTGGTGACTA TTATTATGGA TATCCTGAGC ACCTACTGCT TTAAAATTGG
  TTTTGAATTT TTCACATCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45650056	mCV23449162	ABI	CRAMUS_MOUSE	f	SNP		T						G		G
ss46713144	NES10996672	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss148051824	ENSMUSSNP2128696	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32454557					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46713144	NES10996672	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150370105 () rs orientation: forward

Symbol	Name	Function Class
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605266	regulatory region 605266	1865 bp distal
Rr605267	regulatory region 605267	1205 bp distal
Rr605268	regulatory region 605268	1458 bp distal
Tssr40405	transcription start site region 40405	864 bp upstream