rs32453486 SNP Detail

Summary

• ID
  rs32453486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTATTTA TTTCTATTTG
  TTCTTTTTGT TTTTTTGCTC CTGTTGTTGT CCGTACAGGG ATGAAACCCA GATCTTCACT
  CAAGCAAGGC AAACTGTCTA GCTCACCGCC ACACTCCCAC GCCTAACCAG CTTGAACTTG
  ATGAACACAG GAGAAAACAG GTTGTGTGGG AGGTGGGAGA GGAGCGTTAG TGAGGCAGGA
  R
  GAAGAGTGGA GGGGGAAGAG TTTTGCAAAG AGTGATGGGG GCTTCTGAGG CTCTGAAGCA
  GGCAGGAGCC AGGCTGTGCT TAGATGTTTG AGCTGGGAGC TTTGGGAAGC CAAGAAGAGG
  ATCAGAGGCA AAGTTGAGGC TGGAGAGATG GCTCAGCAGT TAAGAACACT GGCTGCTCTT
  GCAGAGGACT CAGGTTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45650339	mCV24227321	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147477940	ENSMUSSNP3768915	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321336237	CHEV_4_132314087	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32453486					SNP	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	841 bp distal
Gm70165	predicted gene, 70165	30 bp upstream
Rr601063	regulatory region 601063	931 bp distal
Rr601064	regulatory region 601064	657 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	925 bp upstream
Tssr43702	transcription start site region 43702	1065 bp upstream
Tssr43703	transcription start site region 43703	1020 bp upstream
Tssr43704	transcription start site region 43704	985 bp upstream
Tssr43705	transcription start site region 43705	932 bp upstream
Tssr43706	transcription start site region 43706	913 bp upstream