rs32438665 SNP Detail

Summary

• ID
  rs32438665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161516453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTTTCTT TTCTTTCTGA AAAGTAATAG ATGTAATTAA
  AGAAAATGTA TGGATTTCTT GTGGAGAGAG AGAAATAAAA ACCACTCAAA ATTCCACAAG
  R
  CGCAGCATTA GTGTCTTAAT GTTTTAATAC TTTCAATGCT TTTAAACGTT TTACTAAAAT
  ATCAAGTGTG TATATATAAG TATGTATGTA CATATATAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45147435	mCV23478120	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss60335875	NES15831927	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G		G	A	G	G	A	G	G	A	G
ss145919528	ENSMUSSNP1436710	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32438665					SNP	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335875	NES15831927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161516453 () rs orientation: forward

Symbol	Name	Function Class
Rr421818	regulatory region 421818	890 bp distal
Rr421819	regulatory region 421819	1125 bp distal
Rr421820	regulatory region 421820	47 bp proximal