rs32430249 SNP Detail

Summary

• ID
  rs32430249
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171677687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT TTGAGCTTAG CCCATGCACA
  W
  GCTAGCCCTG AGATGCAAGC TAAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45146913	mCV24401584	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss120003768	PARCsnp_1.15961	PARC_SEQ	INBRED	f	SNP			T	A
ss120006285	PARCsnp_1.05410	PARC_SEQ	INBRED	f	SNP			T	A
ss146176061	ENSMUSSNP4087594	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320121288	CHEV_1_173780251	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32430249					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171677687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd84	CD84 antigen			Intron
				Noncoding-Transcript-Variant
Rr423404	regulatory region 423404			1070 bp distal
Rr423405	regulatory region 423405			256 bp distal
Tssr292	transcription start site region 292			464 bp downstream
Tssr10111	transcription start site region 10111			1714 bp downstream
Tssr10112	transcription start site region 10112			275 bp downstream
Tssr10113	transcription start site region 10113			1732 bp upstream
Tssr10114	transcription start site region 10114			1781 bp upstream
Tssr10115	transcription start site region 10115			1840 bp upstream
Tssr10116	transcription start site region 10116			1862 bp upstream
Tssr10117	transcription start site region 10117			1875 bp upstream
Tssr10118	transcription start site region 10118			1894 bp upstream
Tssr10119	transcription start site region 10119			1910 bp upstream
Tssr10120	transcription start site region 10120			1931 bp upstream
Tssr10121	transcription start site region 10121			1972 bp upstream
Tssr15122	transcription start site region 15122			598 bp upstream
Tssr15123	transcription start site region 15123			583 bp upstream
Tssr15124	transcription start site region 15124			572 bp upstream