rs32425240 SNP Detail

Summary

• ID
  rs32425240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66145502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCATGC CTTTAAGTTC
  CAGAGAAGAG CTTCATTAAG AAAGAGAATA AGAGAGAGAT AGACAGGGAG TTGACACAAA
  GAGAGATAGT GAGAAGAGGC AAGAGGACCC TCTTTAGAGA ACAGCCTTCA GGTAATCTTC
  CAAGGAGTTC ACTTGAGGAG TCTTCAGATC AACCCAAGAA GAAAGAAAAG ACTATATACC
  Y
  TTTAACAACC TTTTAGCAGT GGGGGAAGTG TCACACCATG TGACTTAGGT GAACACAGTG
  CTATGAGACA AAGAACACCG AGGAGACAGG TAGTAGTGAG GACCATAAAT CAGGACCCGC
  TATAGTCTTT GGCAGAGACA GTTATAAGGA GACATGGCCA GCTTCCTGAT GTTGGATCTG
  GCCTAAAGGA GGAGCCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39402248	mCV22883872	ABI	CRAMUS_MOUSE	f	SNP		C	T			C	C
ss51699613	NES14568696	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		C	C	C		T	C		C
ss148032499	ENSMUSSNP3407329	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C
ss325001798	CHEV_15_66105215	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32425240					SNP	C	C	T	T	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51699613	NES14568696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66145502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnq3	potassium voltage-gated channel, subfamily Q, member 3			Intron
				Noncoding-Transcript-Variant