rs32425142 SNP Detail

Summary

• ID
  rs32425142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGATTC CTCCACCACA
  GGTGAACTCT TTCCATTCCA AGGCTGGGAC GTGCTCCAGT TCCTTCAGGA GCTGTTCAGT
  GGTGGCTCCC GATGGGTTTG AAGCCATACA TTAAGCCAAG CCCTGGGAAA CCAAGCGTTG
  ATGCTCCTGA TCTGTTTCTG GCGATTGCCA GATGTGTCAC CTTGGGAGGG AAGAGCTACC
  Y
  CTACAGAGCA CATTTTAAAA AGTTGTTTTG AGATAAGATT CTCAGGCTGC CCTCTAACCC
  ACAAAGGTCC TTCTGCCTCT GCTGTAGCAT GCTGGGACTG CAGGTGTGCA CCCCTGCATG
  TGCATTTTCC ACTCTCAAGC CACTTCTCTT TTCTTTTTCC TCATAAAAGC AGAAGAGCAG
  GAGCTGGAGA GATGACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48164002	NES11834327	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32425142					SNP	T	C	C	C	T	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48164002	NES11834327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433551 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	729 bp distal
Rr643243	regulatory region 643243	1330 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	704 bp proximal
Rr643246	regulatory region 643246	1630 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1687 bp downstream
Tssr2122	transcription start site region 2122	1961 bp upstream
Tssr64897	transcription start site region 64897	1683 bp upstream
Tssr71003	transcription start site region 71003	1991 bp upstream
Tssr71004	transcription start site region 71004	1973 bp upstream
Tssr71005	transcription start site region 71005	1628 bp upstream
Tssr71006	transcription start site region 71006	1595 bp upstream
Tssr71007	transcription start site region 71007	1533 bp upstream
Tssr71008	transcription start site region 71008	1427 bp upstream
Tssr71009	transcription start site region 71009	1365 bp upstream
Tssr71010	transcription start site region 71010	1245 bp upstream
Tssr71011	transcription start site region 71011	1221 bp upstream
Tssr71012	transcription start site region 71012	1191 bp upstream
Tssr71013	transcription start site region 71013	563 bp upstream
Tssr71014	transcription start site region 71014	19 bp upstream
Tssr71015	transcription start site region 71015	93 bp downstream
Tssr71016	transcription start site region 71016	329 bp downstream
Tssr71017	transcription start site region 71017	778 bp downstream
Tssr71018	transcription start site region 71018	819 bp downstream